There are 2 ways to scan software lists. The easy one is the separate one, i.e. you simply have different profiles for each software list. So you simply drag'n drop the files (or a subset of it) from MAME's hash folder into the profiler. Setup a rompath for it, scan...
The hard way is the combined one. In this case you answer "yes" after the general import (as you did) when you're asked to include software lists. Then you have to setup rompaths and assign unique (!) rompaths to each imported software lists. This can be done in the "systems" dialog which is accessible from the scanner/rebuilder/merger.
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